Walnut (Juglans regia) is the most economically important and widespread nut crop in Ukraine. As bacterial diseases of walnut can reduce the yield of this culture by up to 40%, the monitoring of pathogens in a given crop and their identification are extremely important. The fatty acid composition of cell lipids is used in the taxonomy of plant pathogenic bacteria. The objective of this study was to determine the fatty acid composition of cell lipids of Agrobacterium, Xanthomonas, and Pseudomonas collection strains that can actually infect walnut, and those isolated from affected walnut trees in different regions of Ukraine. Fatty acid methyl esters were obtained by two different methods of extraction, with the use of 5% acetyl chloride in methanol at 100°C for 4 h, or 1.5% sulfuric acid in methanol at 80°C for 1 hour. Fatty acid methyl esters were analyzed using gas chromatography–mass spectrometry system. According to the found similarity of the fatty acid composition, the strains isolated from the affected walnut were related to representative collection strains of A. tumefaciens, X. arboricola and P. syringae. It should be noted that during the isolation of fatty acids with the
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